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Computational Genomics

Andrechek, Eran Andrechek, Eran

(Physiology), Bioinformatic approaches in combination with model systems to examine breast cancer.

Buell, Robin Buell, Robin

(Plant Biology), Genome biology of plants including domestication, genetic diversity, pan-genome analyses and biochemical pathway discovery in model species, crops, and medicinal plants.

Chandler, Ron Chandler, Ron

(Obstetrics, Gynecology, and Reproductive Biology) Integrated role of chromatin remodeling, epigenetics, and inflammatory signaling pathways in female reproductive tract homeostasis and inflammation-associated gynecologic cancer.

Chitwood, Dan Chitwood, Dan

(Horticulture & Computational Mathematics, Science & Engineering), We develop mathematical methods to describe complex phenotypes, in both plants and animals, measured using X-ray Computed Tomography.

Cui, Yuehua Cui, Yuehua

(Statistics and Probability), Statistical genetics/genomics; Genetic association studies; Gene network inference; Gene-gene and gene-environment interactions; Casual mediation analysis; Omics data integration.

Gondro, Cedric Gondro, Cedric

(Animal Science) Genetic architecture of complex traits and genomic prediction, livestock genetics, particularly beef cattle and beef quality, artificial Intelligence and computational statistics methods applied to genomics.

Hsu, Polly Hsu, Polly

(Department of Biochemistry & Molecular Biology) Using experimental and computational approaches to study genome-wide mRNA translation and identify novel peptides; plant responses under diurnal cycles and environmental stress; circadian rhythms.

Huang, Wen Huang, Wen

(Animal Science), Genetics and evolution of complex quantitative traits using a combination of computational and empirical approaches.

Josephs, Emily Josephs, Emily

(Plant Biology), Plant Evolutionary Genetics and Genomics.

Krishnan, Arjun Krishnan, Arjun

(Computational Mathematica, Science and Engineering), Computational genomics, Applied statistical/machine learning, Integrative analysis of large-scale genomics and biomedical data, Genome-wide molecular networks, Age-specificity and sexual dimorphism in health and disease, Cross-species models for human traits & diseases, Genetic heterogeneity of complex disease and precision medicine.

Latham, Keith Latham, Keith

(Animal Science), Molecular, cellular, genetic and epigenetic regulation of mammalian oocyte biology and preimplantation embryo development. Effects of environmental factors on stem cells.

Liu, Kevin Liu, Kevin

(Computer Science and Engineering), The Liu lab develops new computational methodologies for comparative genomic analyses which are then used to generate novel biological discoveries.

Patterson, Eric Patterson, Eric

(Plant, Soil and Microbial; Sciences), Genome plasticity and evolution of weedy species.

Shiu, Shin-Han Shiu, Shin-Han

(Plant Biology) We are interested in questions related to genome and gene family evolution, environmental stress response and its evolution, transcriptional regulatory mechanisms and evolution using experimental, computational, and systems biological approaches.

Steibel, Juan Pedro Steibel, Juan Pedro

(Animal Science and Fisheries and Wildlife), Statistical genomics and phenomics; analysis and design of transcriptional profiling experiments; Genome-wide association analysis of quantitative traits in outbred populations; Animal quantitative genomics; Precision Animal Agriculture.

VanBuren, Robert VanBuren, Robert

(Horticulture), Integrating genomic, quantitative genetic, and evolutionary approaches to understand the genetic basis of abiotic stress tolerance in plants.

Van Nocker, Steve Van Nocker, Steve

(Horticulture), Chromatin control of gene expression in plant development, histone code, transcription, epigenomics.

Vazquez, Ana Vazquez, Ana

(Epidemiology and Biostatistics), Statistical and quantitative genetics. Developments of models for omic integration. Development of models for prediction of complex traits and health outcomes.